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Species belonging to selected taxon:
Medicago truncatula
ABOUT THIS RECORD
ID:
MNEST008398
species:
Medicago truncatula
miRNA family:
MIR393
source:
miRNEST
Taxonomy by NCBI:
Medicago truncatula
Medicago
Trifolieae
Papilionoideae
Fabaceae
Fabales
fabids
rosids
core eudicotyledons
eudicotyledons
Magnoliophyta
Spermatophyta
Euphyllophyta
Tracheophyta
Embryophyta
Streptophytina
Streptophyta
Viridiplantae
Eukaryota
cellular organisms
SEQUENCE & STRUCTURE
miRNA
TCCAAAGGGATCGCATTGTTT
miRNA*
GCTTGCGAATCTTTTTGCATC
mismatches:
2
bulges:
2
View larger
pre-miRNA
CCTCGCACGACGACA
TCCAAAGGGATCGCATTGTTT
CATACTTCCCTATGTCTGTTAGAAGCGCCGTGTCTCCGAAAGGACAGTCTCTAATCTCAA
GCTT
GCGAATCTTTTTGCATC
CGTTCAATACAT
dot-bracket secondary structure
........((((..(
(.(((((((((((((..((((
............(((((.((.((.((.....)).)).))..)))))............))
)).)
))).))))))))).)).
))))........
SIMILARITIES
miRBase
sbi-MIR393
:
0.0004
PMRD
vvi-miR393b
:
0.0004
microPC
no hits
UniProt
sp|Q9LW29|AFB2_ARATH: 0.000000000000002
RFAM
no hits
most similar mature miRNAs
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction:
not a miRNA
Source sequences
degradome data
download this record